Training a new Classifier
The project aims to use maschine learning methods to emulate a cloud classification scheme. The classifer can be trained using large amounts of data and later be used to predict cloud types from satelite data. Those two steps can be run separately.
This notebook contains a short explanation how to create a new cloud classifier project and train a new classifier
Imports
At first we need to point python to the project folder. The path can be assigned as a relative path as shown below, or as an absolute system path. Than the module can be imported via the import cloud_classifier command.
[1]:
import sys
import ctypytool
import warnings
warnings.filterwarnings("ignore")
Project creation
Our first step is to create a classifier object:
[2]:
cc = ctypytool.cloud_classifier()
Than we need to specify a location where the new classifier and all it’s preference and data file will be stored. We will tell the program to create a new classifier with the name NewRandomForestClassifier in the folder ../classifiers.
[3]:
cc.create_new_project(name="NewRandomForestClassifier", path="../classifiers")
Project folder created successfully!
Project Parameters
The new classifier will automatically be initalized with default parameters. For this example we will leave the parameters as they are. If we want to train a different kind of classifier or change the training parameters, we need to apply those changes to the classifier before continuing. This is described in the Notebook Changing_Project_Parameters
Training the classifier
Manually adding Training Data
First we need to decide how we add training files to our classifier. We can do this by manually calling the method cc.set_project_parameters() with the parameter training_sets to add a list of pairs of training files to our classifier. Each pair needs to contain a satelite file and the corresponding label file.
[4]:
sat_file_1 = "../data/example_data/msevi-medi-20190317_1800.nc"
sat_file_2 = "../data/example_data/msevi-medi-20190318_1100.nc"
label_file_1 = "../data/example_data/nwcsaf_msevi-medi-20190317_1800.nc"
label_file_2 = "../data/example_data/nwcsaf_msevi-medi-20190318_1100.nc"
training_data = [[sat_file_1, label_file_1], [sat_file_2, label_file_2]]
cc.set_project_parameters(training_sets = training_data)
We now run the training pipeline (with the run_training_pipeline() method) which * samples our training data and creates training vectors * uses those vectors to train the classifier * stores the classifier in the project folder
The option create_filelist is set to False to use the user-defined training files.
[5]:
cc.run_training_pipeline(create_filelist = False)
Masked indices set!
sampling took 0.2686769962310791 seconds
Training data created!
Training Forest Classifier
Classifier trained!
Classifier saved!
Using Automatically Generated Lists of Training Data
Alternatively to the manual definition, the training data file list can be generated automatically.
The easiest way to do so is to put all satellite and label files into an training data folder (here it is set to ../data_example_data) and just tell the classifier where to look via the data_source_folder option.
[6]:
%%bash
ls -l ../data/example_data/
total 11663800
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[7]:
cc.set_project_parameters(data_source_folder = "../data/example_data/")
[8]:
cc
[8]:
CTYPYTOOL CLOUD PROJECT class
... project_path : ../classifiers/NewRandomForestClassifier
CTYPYTOOL PARAMETER HANDLER class
=== Parameters ===
... ccp_alpha : 0
... classifier_type : Forest
... cloudtype_channel : ct
... data_source_folder : ../data/example_data/
... difference_vectors : True
... feature_preselection : False
... georef_file : ../data/auxilary_files/msevi-medi-georef.nc
... hours : [0]
... input_channels : ['bt062', 'bt073', 'bt087', 'bt097', 'bt108', 'bt120', 'bt134']
... input_source_folder : ../data/example_data
... label_file_structure : nwcsaf_msevi-medi-TIMESTAMP.nc
... mask_file : ../data/auxilary_files/lsm_mask_medi.nc
... mask_key : land_sea_mask
... mask_sea_coding : 0
... max_depth : 35
... max_features : None
... merge_list : []
... min_samples_split : 2
... n_estimators : 100
... nwcsaf_in_version : v2013
... nwcsaf_out_version : v2018
... original_values : True
... samples : 100
... sat_file_structure : msevi-medi-TIMESTAMP.nc
... timestamp_length : 13
=== Filelists ===
... eval_timestamps : []
... evaluation_sets : []
... input_files : []
... label_files : []
... training_sets : [['../data/example_data/msevi-medi-20190317_1800.nc', '../data/example_data/nwcsaf_msevi-medi-20190317_1800.nc'], ['../data/example_data/msevi-medi-20190318_1100.nc', '../data/example_data/nwcsaf_msevi-medi-20190318_1100.nc']]
In a next step, we can let the classifier predict labels from the input files we have specified. This is again done with the run_prediction_pipeline() method.
Now we want the classifier to automatically generate a list of input files from the designated source folder and therefore set the option create_filelist to True.
[9]:
cc.run_training_pipeline(create_filelist = True)
Filelist created!
Masked indices set!
sampling took 142.87269759178162 seconds
Removed 679 vectors for containig 'Nan' values
Training data created!
Training Forest Classifier
Classifier trained!
Classifier saved!
The classifier is now trained and saved. It can be used for predicting labels of unknown satellite data files as described in the notebook Application_of_a_pretrained_classifier